Source · Genomics
cBioPortal for Cancer Genomics (public studies)
Public cancer genomics cohorts beyond TCGA (MSK-IMPACT, GENIE-derived publications, institutional and consortium studies): every public study becomes a genomic cohort (OncoTree cancer type, sample counts, publication), and its per-gene mutation frequencies are ingested with explicit denominators (samples profiled for the gene / samples with mutation data). Cohorts overlapping GDC (TCGA) are kept as separate, never pooled, cohorts.
CI-SOURCE-00000017connector: cbioportalactivehealthyHomepage API docs Terms
License
License and attribution
- Status
- approved
- License
- ODC Open Database License (ODC-ODbL) unless otherwise noted per study; attribution to the original studies required
- Commercial use
- Restricted
- Redistribution
- Attribution
- Reviewed
- Sep 8, 2026
- Approved for production
- Yes
- Attribution
- Data from cBioPortal for Cancer Genomics (Cerami et al. 2012, PMID 22588877; Gao et al. 2013, PMID 23550210; de Bruijn et al. 2023, PMID 37668528) and from the original studies cited on each cohort.
Reviewed: CancerIndex may ingest and display this data with attribution. Redistribution allowed with attribution. Commercial use restricted.
Connector
Ingest runs
Every execution of the connector: mode, status, counts, duration and dataset version. Runs never mass-delete on a shrunken response (anomaly guard).
| Run | Mode | Status | Started | Duration | Fetched | Created | Updated | Rejected | HTTP fail | Dataset version |
|---|---|---|---|---|---|---|---|---|---|---|
| ING-CBIOPORTAL-20260908-000001 | incremental | succeeded | Sep 8, 2026, 01:18 PM UTC | 6.4 min | 1,084 | 1,084 | 0 | 7 | 0/1,081 | cbioportal-2026-09-01 |
Records
Source records by entity kind
Native records kept for idempotency and lineage (source + entity kind + source record id).
| Entity kind | Status | Records (count) | Last retrieved |
|---|---|---|---|
| mutated_genes | active | 539 | Sep 8, 2026, 01:25 PM UTC |
| study | active | 545 | Sep 8, 2026, 01:25 PM UTC |
Data updated 21 days agoSource updated cbioportal-2026-09-01